species:   Artha
pid:       MI0005408
parent:    ath-MIR853
paralog:   
locus:     3:8346367-8346656
matures:   ['UCCCCUCUUUAGCUUGGAGAAG', 'UCUGCAACCGGAAAGGGGAGC']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 3:8346367-8346656

0 out of bounds
69 alignments
69 proper strand
53 stranded perfect matches

                                               ************************                                                                                                                                                     ***********************                                               
GAGAGGAACAAUUAGGGUUGUUUCAAACAGGGUAAAGUGUUCCUGCUGCUCCCCUCUUUAGCUUGGAGAAGCCAGUAAAUAUCUUUCUCUUCAAGGAACUUGUGGGCCUCAAGAAAACCUGCUAUAAUUCUAGUUUUUCAACAUUCCUCCUUCUGAUAUCAGCAACAACUCCUUACCCUUAAGAAUGGAGAAUGGAACUUCCUCAAAGAUAUUUACUUGGCCUCUGCAACCGGAAAGGGGAGCAGCAUGAAACUCUUUUAACCCUUACCCUGUAUUUGUCAAAAACAGAU
....((((((((....))))))))..((((((((((((.(((.((((((((((((.(((.(.(((.(((.((((((((((((((((.......(((..(....)..)))...(((((...((((......)))))))))..(((((.(((((((...........................)))).))))))))..........)))))))))))).)))).))).)))).))).)))))))))))).))))))..........)))))))))((((((.....))))))
-------------------------------------------------UCCCCUCUUUAGCUUGGAGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=3 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGAGC----------------------------------------------- l=21 a=48 c*
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGAGC----------------------------------------------- l=21 a=48 ma
-------------------------------------------------UCCCCUCUUUAGCUUGGAGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=3 ma*

-------------------------------------------------UCCCCUCUUUAGCUUGGAGAAa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=2 
-------------------------------------------------UCCCCUCUUUAGCUUGGAGAAc--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-------------------------------------------------UCCCCUCUUUAGCUUGGAGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=3 (c,ma*)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGA------------------------------------------------- l=19 a=2 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGAGC----------------------------------------------- l=21 a=48 (c*,ma)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGAGu----------------------------------------------- l=21 a=11 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCGGAAAGGGGAGa----------------------------------------------- l=21 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUGCAACCaGAAAGGGGAGC----------------------------------------------- l=21 a=1 

mb-01111
ax-1111011
ku-01
ss-111111111111
fn-111
